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Shopify ERP Integration That Makes the Books Match the Store
Shopify ERP integration for businesses whose accounting software and ERP never quite agree with Shopify. Choose your system, see a fixed price first and launch a sync that has been checked against real orders, refunds and payouts.
- A page for every accounting tool and ERP system
- Orders, refunds, fees, taxes and payouts mapped before they move
- Inventory and costs kept consistent with the store
- Reconciled against real orders before you rely on it

A Ledger That Agrees With the Store
Shopify records a sale, the gateway records a payout and the ledger records something slightly different. The gap is fees, taxes, refunds and timing, and it is usually closed by hand at month end. Shopify accounting integrations close that gap, and the packages below map each of those pieces into your accounting software or ERP and prove the totals match.
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Building Shopify stores since
Secure checkout
Pay through a protected checkout and keep a full order record.
Two revision rounds
Included in every package, so the result matches what you pictured.
Backup before changes
We work on a duplicate of your theme, never on your live store.
Who Needs a Shopify ERP or Accounting Integration
The trigger is rarely software. It is a month-end that takes days, a payout nobody can match or stock the ERP does not know about. These are the businesses we help.
Owners who reconcile by hand
Payouts, fees and refunds are matched in a spreadsheet each month. We post summaries or transactions to the ledger with the mapping an accountant expects.
Businesses running stock in an ERP
The ERP is the source of truth for inventory, while Shopify sells it. We keep stock, costs and orders in step in both directions.
Sellers with several currencies and taxes
Multi-currency orders, VAT and sales tax need correct accounts. We map tax lines and currencies so reports balance.
Wholesale and B2B sellers
Trade customers need invoices, terms and statements. We create the documents in the finance system and keep balances current.
Accountants supporting an online store
Bookkeepers want clean, explainable entries. We provide mapping notes and a trail from the order to the ledger line.
Companies with a bespoke ERP
A legacy or custom ERP can receive Shopify orders through the API or a file route as a fixed build.
Choose Your System From 71 Shopify Finance and ERP Integrations
Each card opens a service page for one accounting tool or ERP, with three packages and a fixed price. These are the systems we are asked about most, from a simple ledger link to a full Shopify integration with ERP. Other systems are listed in the index below, and the quote card handles the rest.
Online accounting software
For businesses that want accounting software for a Shopify store, with orders, fees and payouts posted correctly.
QuickBooks Online
Shopify orders, refunds, fees and payouts posted to QuickBooks Online with a chart-of-accounts mapping you approve. The Shopify integration with QuickBooks Online is tested against real payouts, including partial refunds.
A partial refund and a multi-item payout are used as test cases, because those are where totals most often drift from the bank.
Best for: Stores whose books live in QuickBooks Online
3 to 14 working days
View integrationXero
Shopify sales, refunds and payouts posted to Xero with tax rates and tracking categories mapped. We reconcile test payouts to bank lines before launch.
Tax rates and tracking categories are mapped with your accountant, and test payouts are reconciled to bank lines before launch.
Best for: Stores whose books live in Xero
3 to 14 working days
View integrationWave
Shopify sales and fees posted to Wave with accounts mapped, including a route for payouts and refunds. We test with a month of sample orders.
Accounts are mapped once and documented, with a route for payouts and refunds tested against a month of sample orders.
Best for: Small stores on Wave
3 to 14 working days
View integrationZoho Books
Shopify orders, invoices and payments synced to Zoho Books with tax settings mapped. Where you also use Zoho Inventory or CRM, we keep records consistent.
Tax settings are mapped, and where you use Zoho Inventory or CRM we keep all three consistent for the same order.
Best for: Stores inside the Zoho suite
3 to 14 working days
View integrationFreshBooks
Shopify sales posted to FreshBooks as invoices or sales receipts, with clients matched to customers. Refunds and partial payments are tested.
Clients are matched to customers, and partial payments and refunds are tested so invoices always show the right balance.
Best for: Service-led stores that invoice clients
3 to 14 working days
View integrationFreeAgent
Shopify sales, fees and payouts posted to FreeAgent with categories and VAT mapped, and bank matching tested. Notes explain the mapping to your accountant.
Categories and VAT are mapped, bank matching is tested, and notes explain the mapping to your accountant.
Best for: UK businesses on FreeAgent
3 to 14 working days
View integrationSage Accounting
Shopify sales, refunds and payouts posted to Sage Accounting with ledger accounts and tax codes mapped. We test a month of mixed orders.
Ledger accounts and tax codes are mapped, and a month of mixed orders is posted and checked before launch.
Best for: Businesses that use Sage for their books
3 to 14 working days
View integrationRegional and local favourites
For businesses that keep books in a tool built for their country or accountant.
QuickBooks Desktop
Shopify orders posted to QuickBooks Desktop through a connector or file route, with items, customers and tax mapped. Company-file handling and timing are agreed first.
Company-file handling and timing are agreed first, so the sync never fights a user who has the file open.
Best for: Businesses still on QuickBooks Desktop
3 to 14 working days
View integrationMYOB
Shopify sales and payouts posted to MYOB with accounts and tax codes mapped for your region. A test period is reconciled before launch.
Accounts and tax codes for your region are mapped, and a test period is reconciled before anything posts to live books.
Best for: Businesses on MYOB in Australia and New Zealand
3 to 14 working days
View integrationFortnox
Shopify orders and payments posted to Fortnox with Swedish tax rules mapped, and customers and articles matched. Test payouts are reconciled.
Swedish tax rules are mapped, customers and articles are matched, and test payouts are reconciled.
Best for: Swedish businesses on Fortnox
3 to 14 working days
View integrationbexio
Shopify sales, invoices and payments synced to bexio with Swiss VAT and accounts mapped. Test orders cover refunds and partial payments.
Swiss VAT and accounts are mapped, and refunds and partial payments are tested end to end.
Best for: Swiss businesses on bexio
3 to 14 working days
View integrationMoneybird
Shopify sales and payouts posted to Moneybird with Dutch VAT mapped and contacts matched to customers. Refund handling is tested.
Dutch VAT is mapped, contacts are matched to customers, and refund handling is tested on a sample month.
Best for: Dutch businesses on Moneybird
3 to 14 working days
View integrationPennylane
Shopify orders and payouts sent to Pennylane with French VAT and accounts mapped for your accountant. A test month is reconciled before launch.
French VAT and accounts are mapped for your accountant, and a test month is reconciled before launch.
Best for: French businesses on Pennylane
3 to 14 working days
View integrationLexoffice
Shopify orders and payments posted to Lexoffice with German VAT rules mapped and customers matched. We test refunds and cross-border orders.
German VAT rules are mapped, customers are matched, and refunds and cross-border orders are tested.
Best for: German businesses on Lexoffice
3 to 14 working days
View integrationERP and enterprise finance
For businesses where Shopify must feed an ERP for stock, purchasing and finance, in line with Shopify ERP integration services.
NetSuite
Shopify orders, customers, items and refunds connected to NetSuite as a native-connector or middleware build, with mapping and sandbox testing. Order-to-cash is tested before cutover.
Order-to-cash is rehearsed in a sandbox, including a return, before any live record is written.
Best for: Growing brands running NetSuite
5 to 30 working days
View integrationOdoo
Shopify orders, products, stock and customers connected to Odoo, with modules and accounts mapped. We test sale, delivery, invoice and return paths.
Sale, delivery, invoice and return paths are tested across the modules you use, with accounts and warehouses mapped.
Best for: Businesses running Odoo as their ERP
5 to 30 working days
View integrationSAP Business One
Shopify orders and customers connected to SAP Business One as part of our Shopify SAP Business One integration services, with items, prices and stock mapped. Sandbox testing comes before any live write.
Items, prices and stock are mapped carefully, and sandbox runs come before any write reaches your live company.
Best for: Businesses on SAP Business One
5 to 30 working days
View integrationMicrosoft Dynamics365 Business Central
Shopify orders, customers, items and stock connected to Business Central, with posting groups and dimensions mapped. A sandbox environment is used for the first runs.
Posting groups and dimensions are mapped with your finance team, and the first runs happen in a sandbox environment.
Best for: Businesses on Dynamics 365 Business Central
5 to 30 working days
View integrationAcumatica
Shopify orders and customers connected to Acumatica with items, warehouses and tax mapped, tested in a sandbox tenant. Order-to-cash and returns are covered.
Warehouses, items and tax are mapped, and order-to-cash and returns are tested in a sandbox tenant.
Best for: Mid-market firms on Acumatica
5 to 30 working days
View integrationErpnext
Shopify orders, items and stock connected to ERPNext, including self-hosted installs, with accounts and warehouses mapped. Idempotent writes protect against doubles.
Accounts and warehouses are mapped, writes are safe to repeat, and self-hosted installs are tested through a restart.
Best for: Businesses on ERPNext
3 to 14 working days
View integrationSage Intacct
Shopify sales and payouts posted to Sage Intacct with dimensions and entities mapped, and a sandbox used for first runs. Revenue and tax lines are reconciled.
Dimensions and entities are mapped, a sandbox is used for first runs, and revenue and tax lines are reconciled.
Best for: Finance teams on Sage Intacct
5 to 30 working days
View integrationIs your accounting system or ERP missing?
Name the system and what must post from Shopify, such as orders, refunds or stock. We check what its API or import route allows and send a fixed quote, or say plainly if another route fits.
Request a QuoteNeed accounting plus inventory or shipping?
Finance, stock and shipping share orders. Ask for a single quote and we scope both links together, with one plan for testing.
Request a QuoteAll 71 Shopify Finance and ERP Integrations, A to Z
Every accounting tool, invoicing app and ERP we cover has its own page with packages and a fixed price. Look up your system below and open its page to read exactly what is covered.
How Shopify Sales Are Mapped Before They Reach the Ledger
Every finance integration starts with an account map. We match each kind of Shopify record to the right ledger account, flag what has no home and test with a payout before anything posts for real.
Which Shopify ERP Integration Route Fits You?
Finance systems connect to Shopify in three ways. Spot your need in the left column and read along to see which option covers it.
| What matters | Accounting app or connector | Middleware or automation tool | Custom ERP build |
|---|---|---|---|
| Summaries posted per payout | Common | Yes | Yes |
| Every order posted as a transaction | Some | Yes | Yes, with rules |
| Accounting software for Shopify integration with tax mapping | Basic | Per workflow | Designed per region |
| Stock and costs shared with an ERP | Limited | Partly | Yes, both directions |
| Refunds, fees and disputes traced | Check the vendor | Yes | Yes, built in |
| Sandbox testing before go-live | Rare | Possible | Standard for ERPs |
| A system with no ready connector | Not available | If the platform lists it | Yes, through its API or files |
| Typical fit for our packages | Setup and mapping | Most single-system builds | Enterprise or legacy builds |
How a Shopify ERP Integration Project Runs
A simple accounting sync and an ERP cutover follow the same six steps. The workload changes, not the method, and nothing posts to your live books until a test month reconciles.
- 1
Choose the system and package
Open the page for your accounting tool or ERP and choose a package, with the price and delivery estimate shown before you pay.
- 2
Choose how we get access
Invite us through a collaborator request, or have us build in our own Partner account before handing ownership across, or create a restricted staff login for us. In the finance system we use a user or sandbox you create.
- 3
Agree the account map with your accountant
We list each kind of order, refund, fee and tax line with the account it posts to. Your accountant reviews it and we change it before anything is built.
- 4
Build against a sandbox or test company
The sync is built against a sandbox, a test company or a copy of your books. Live ledgers stay untouched while we map and test.
- 5
Reconcile a test period
We post a sample period of orders, refunds and payouts and tie the totals to Shopify and the bank. Differences are explained or fixed.
- 6
Go live and hand over
After approval the sync switches to live books. You receive a recorded walkthrough and written mapping notes for your accountant.
Why Brands Hire Us for Shopify ERP Integration
Posting an order to a ledger is easy. Brands hire us for the account mapping, test reconciliation and sandbox runs that make the books trustworthy.
A Shopify-focused team
Shopify is the only platform we have worked on since 2015, across more than 450 launched stores. Refunds, fees, taxes and payouts are familiar before your project starts.
A fixed price for each system
Every finance system has a page with three packages and a visible price. Software and connector plans stay with the vendors.
Reconciled, not assumed
We tie a test period to Shopify and the bank, so differences surface in testing and not at month end.
Mapping your accountant can read
Every build ends with a plain-language mapping of orders, fees and taxes to ledger accounts.
Accounts stay yours
Your books, ERP and store remain under your logins, with access we use removed at handover.
Rated 4.9+ by verified clients
Real, verified clients produce the 4.9+ average. The reviews below show what they said about the brief, the conversation and the delivery.
What Clients Say After Launch
Verified clients describe working with Store Design Expert on builds, integrations and fixes.
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Shopify ERP Integration FAQs
Direct answers on cost, systems, tax and reconciliation.
How much does a Shopify ERP integration cost?
Packages start at $390 for a single accounting workflow and rise with the number of flows and the system. ERP systems such as NetSuite, SAP and Dynamics sit in the higher band. Each page lists three packages and a delivery estimate before you pay, and software subscriptions are billed by the vendors.
Is Shopify an ERP?
No. Shopify is a commerce platform that handles products, orders and customers. An ERP adds purchasing, finance and wider operations, and the two are usually connected so each does its own job.
Does Shopify have accounting software built in?
Shopify has reports and tax tools, but it does not replace accounting software. Most stores connect an accounting system and we build and test that link for the one you use.
What is the best ERP for Shopify?
It depends on size, stock complexity and budget. We connect the main systems listed above, so you can compare what each integration involves before choosing.
Which accounting software for Shopify store owners do you set up?
The main online and regional tools are in the cards above and the index. If your accountant uses another tool, send a quote request with its name.
Can you handle accounting software for Shopify integration across countries?
Yes. We map tax lines, currencies and accounts for each market you sell in, and your accountant reviews the map before we build.
Do you handle a Shopify integration with QuickBooks Online and Xero?
Yes. Both have their own pages with packages. We post orders, refunds, fees and payouts with a mapping you approve and reconcile a test period before launch.
Is there a Shopify ERP integration guide I can follow myself?
Vendor and agency guides exist, and a simple ledger link can be done in-house. For ERPs with stock, costs and tax, most owners prefer a tested build. We write a plain-language mapping so your team understands it either way.
Can you connect SAP to Shopify?
Yes. A SAP to Shopify integration usually runs through a connector, middleware or an API build. SAP Business One has its own page, and larger SAP systems are scoped through a quote.
Do you offer a Shopify ERP for supply chain management setup?
We connect Shopify to the ERP that runs purchasing and stock, so sales, stock levels and costs agree. We do not replace your ERP, and we test stock on sale, return and receipt.
Can a top accountant offering Shopify integration work with you?
Yes. We write a mapping your accountant can review, and we join a call if they want to confirm accounts and tax treatment before we build.
How long does a finance integration take?
A single accounting sync usually takes 3 to 8 working days. ERP builds with sandbox testing and approvals take longer, up to 30 working days, depending on the system and package.
Do I give you my Shopify or accounting password?
No. A collaborator request does the job, and if you prefer, we build in our own Partner account and transfer it, or you create a restricted login. In the finance system we use a user or sandbox you create and remove at handover.
Get Your Shopify ERP Integration Working
Open the page for your accounting tool or ERP, read what is included and see a fixed price before you commit. If you run several finance systems, send a short quote request and we will scope them as one project.
- Fixed price shown first
- Test period reconciled
- Your accounts stay yours
